Package de.unirostock.sems.bives.sbml.parser

Class Summary

Class	Description
SBMLAlgebraicRule	The Class SBMLAlgebraicRule used to express equations that are neither assignments of model variables nor rates of change.
SBMLAnotation	The Class SBMLAnotation ,a container for optional software-generated content not meant to be shown to humans.
SBMLAssignmentRule	The Class SBMLAssignmentRule used to express equations that set the values of variables.
SBMLCompartment	The Class SBMLCompartment, a bounded space in which species are located.
SBMLCompartmentType	The Class SBMLCompartmentType, a grouping construct used to establish a relationship between multiple SBMLCompartments.
SBMLConstraint	The Class SBMLConstraint, a mechanism for stating the assumptions under which a model is designed to operate.
SBMLDiffReport	The Class SBMLDiffReport creates a report about the differences between two versions of an SBML document.
SBMLDocument	The Class SBMLDocument representing a document holding an SBMLModel.
SBMLEvent	The Class SBMLEvent describes the time and form of instantaneous, discontinuous state changes in the model.
SBMLEventAssignment	The Class SBMLEventAssignment.
SBMLEventDelay	The Class SBMLEventDelay.
SBMLEventPriority	The Class SBMLEventPriority.
SBMLEventTrigger	The Class SBMLEventTrigger.
SBMLFunctionDefinition	The Class SBMLFunctionDefinition associates an identifier with a function definition.
SBMLGenericIdNameObject	The Class SBMLGenericIdNameObject representing a generic object that has an id and a name.
SBMLGenericObject	The Class SBMLGenericObject representing a generic SBML object.
SBMLInitialAssignment	The Class SBMLInitialAssignment assigning initial values to entities in a model.
SBMLKineticLaw	The Class SBMLKineticLaw defines the speed at which the process defined by the reaction takes place.
SBMLListOf	The Class SBMLListOf represents a list of something in SBML.
SBMLMeta	The Class SBMLMeta to handle annotations and stuff.
SBMLModel	The Class SBMLModel representing a model encoded in SBML.
SBMLParameter	The Class SBMLParameter is used to define a symbol associated with a value; this symbol can then be used in mathematical formulas in a model.
SBMLRateRule	The Class SBMLRateRule used to express equations that determine the rates of change of variables.
SBMLReaction	The Class SBMLReaction represents any kind of process that can change the quantity of one or more species in a model.
SBMLRule	The abstract Class SBMLRule.
SBMLSBase	The Class SBMLSBase.
SBMLSimpleSpeciesReference	The Class SBMLSimpleSpeciesReference representing a link to a species (mainly for modifiers, parent class for substrates and products).
SBMLSpecies	The Class SBMLSpecies representing a species in an SBML document.
SBMLSpeciesReference	The Class SBMLSpeciesReference representing a link to a species.
SBMLSpeciesType	The Class SBMLSpeciesType representing type of species (level < 3).
SBMLUnit	The Class SBMLUnit representing a factor based on a unit:
SBMLUnitDefinition	The Class SBMLUnitDefinition.