Package de.unirostock.sems.bives.sbml.parser

Class SBMLDiffReport

java.lang.Object

de.unirostock.sems.bives.sbml.parser.SBMLDiffReport

public class SBMLDiffReport
extends Object

The Class SBMLDiffReport creates a report about the differences between two versions of an SBML document.

Author:

Martin Scharm

Constructor Summary

Constructors

Constructor	Description
SBMLDiffReport()	Instantiates a new sBML diff report.

Method Summary

Modifier and Type	Method	Description
void	addHeader(String header)	Adds the header.
String	generateHTMLReport()	Generate html report.
void	modifyCompartments(String rep)	Modify compartments.
void	modifyCompartmentTypes(String rep)	Modify compartment types.
void	modifyContraints(String rep)	Modify contraints.
void	modifyEvents(String rep)	Modify events.
void	modifyFunctions(String rep)	Modify functions.
void	modifyInitialAssignments(String rep)	Modify initial assignments.
void	modifyParameter(String rep)	Modify parameter.
void	modifyReaction(String rep)	Modify reaction.
void	modifyRules(String rep)	Modify rules.
void	modifySpecies(String rep)	Modify species.
void	modifySpeciesTypes(String rep)	Modify species types.
void	modifyUnits(String rep)	Modify units.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SBMLDiffReport

public SBMLDiffReport()

Instantiates a new sBML diff report.

Method Detail

generateHTMLReport

public String generateHTMLReport()

Generate html report.

Returns:

the string

addHeader

public void addHeader(String header)

Adds the header.

Parameters:

header - the header

modifySpecies

public void modifySpecies(String rep)

Modify species.

Parameters:

rep - the rep

modifySpeciesTypes

public void modifySpeciesTypes(String rep)

Modify species types.

Parameters:

rep - the rep

modifyParameter

public void modifyParameter(String rep)

Modify parameter.

Parameters:

rep - the rep

modifyReaction

public void modifyReaction(String rep)

Modify reaction.

Parameters:

rep - the rep

modifyCompartments

public void modifyCompartments(String rep)

Modify compartments.

Parameters:

rep - the rep

modifyCompartmentTypes

public void modifyCompartmentTypes(String rep)

Modify compartment types.

Parameters:

rep - the rep

modifyRules

public void modifyRules(String rep)

Modify rules.

Parameters:

rep - the rep

modifyFunctions

public void modifyFunctions(String rep)

Modify functions.

Parameters:

rep - the rep

modifyContraints

public void modifyContraints(String rep)

Modify contraints.

Parameters:

rep - the rep

modifyEvents

public void modifyEvents(String rep)

Modify events.

Parameters:

rep - the rep

modifyInitialAssignments

public void modifyInitialAssignments(String rep)

Modify initial assignments.

Parameters:

rep - the rep

modifyUnits

public void modifyUnits(String rep)

Modify units.

Parameters:

rep - the rep