Package de.unirostock.sems.bives.sbml.parser

Class SBMLEventTrigger

java.lang.Object

de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

de.unirostock.sems.bives.sbml.parser.SBMLSBase

de.unirostock.sems.bives.sbml.parser.SBMLEventTrigger

public class SBMLEventTrigger
extends SBMLSBase

The Class SBMLEventTrigger. The exact moment at which the math in the trigger evaluates to "true" during a simulation is taken to be the time point when the Event is triggered. .

Author:

Martin Scharm

Field Summary

Fields inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

documentNode, sbmlModel

Constructor Summary

Constructors

Constructor	Description
SBMLEventTrigger(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event trigger.

Method Summary

Modifier and Type	Method	Description
de.unirostock.sems.bives.ds.MathML	getMath()	Gets the math.
void	reportDelete(de.unirostock.sems.bives.markup.MarkupElement me)	Report delete.
void	reportInsert(de.unirostock.sems.bives.markup.MarkupElement me)	Report insert.
void	reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLEventTrigger a, SBMLEventTrigger b, de.unirostock.sems.bives.markup.MarkupElement me)	Report modifications.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

getDocumentNode, getModel

Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLSBase

addOntologyLink, flagMetaModifcations, getAnnotation, getMetaId, getNotes, getOntologyLinks, getSBOTerm

Constructor Detail

SBMLEventTrigger

public SBMLEventTrigger(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                        SBMLModel sbmlModel)
                 throws BivesSBMLParseException

Instantiates a new SBML event trigger.

Parameters:

documentNode - the document node encoding this entity in the corresponding XML tree

sbmlModel - the SBML model

Throws:

BivesSBMLParseException - the bives sbml parse exception

Method Detail

getMath

public de.unirostock.sems.bives.ds.MathML getMath()

Gets the math.

Returns:

the math

reportModification

public void reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                               SBMLEventTrigger a,
                               SBMLEventTrigger b,
                               de.unirostock.sems.bives.markup.MarkupElement me)

Report modifications.

Parameters:

conMgmt - the connection manager

a - the original version

b - the modified version

me - the markup element

reportInsert

public void reportInsert(de.unirostock.sems.bives.markup.MarkupElement me)

Report insert.

Parameters:

me - the me

reportDelete

public void reportDelete(de.unirostock.sems.bives.markup.MarkupElement me)

Report delete.

Parameters:

me - the me