Package de.unirostock.sems.bives.sbml.parser

Class SBMLUnit

java.lang.Object

de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

de.unirostock.sems.bives.sbml.parser.SBMLSBase

de.unirostock.sems.bives.sbml.parser.SBMLUnit

All Implemented Interfaces:

de.unirostock.sems.bives.markup.Markup

public class SBMLUnit
extends SBMLSBase
implements de.unirostock.sems.bives.markup.Markup

The Class SBMLUnit representing a factor based on a unit:

 (multiplier * 10^scale * kind)^exponent
        

Author:

Martin Scharm

Field Summary

Fields

Modifier and Type	Field	Description
static String[]	BASE_UNITS	those are BASE_UNITS.
static String[]	PREDEFINED_UNITS	those are predefined units.

Fields inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

documentNode, sbmlModel

Constructor Summary

Constructors

Constructor	Description
SBMLUnit(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML unit derived from a base unit.

Method Summary

Modifier and Type	Method	Description
String	markup()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject

getDocumentNode, getModel

Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLSBase

addOntologyLink, flagMetaModifcations, getAnnotation, getMetaId, getNotes, getOntologyLinks, getSBOTerm

Field Detail

BASE_UNITS

public static final String[] BASE_UNITS

those are BASE_UNITS.

PREDEFINED_UNITS

public static final String[] PREDEFINED_UNITS

those are predefined units.

Constructor Detail

SBMLUnit

public SBMLUnit(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                SBMLModel sbmlModel)
         throws BivesSBMLParseException,
                de.unirostock.sems.bives.exception.BivesDocumentConsistencyException

Instantiates a new SBML unit derived from a base unit.

Parameters:

documentNode - the document node encoding this entity in the corresponding XML tree

sbmlModel - the SBML model

Throws:

BivesSBMLParseException - the bives sbml parse exception

de.unirostock.sems.bives.exception.BivesDocumentConsistencyException - the bives document consistency exception

Method Detail

markup

public String markup()

Specified by:

markup in interface de.unirostock.sems.bives.markup.Markup