Uses of Class
de.unirostock.sems.bives.sbml.parser.SBMLModel

Packages that use SBMLModel

Package	Description
de.unirostock.sems.bives.sbml.parser

Uses of SBMLModel in de.unirostock.sems.bives.sbml.parser

Fields in de.unirostock.sems.bives.sbml.parser declared as SBMLModel

Modifier and Type	Field	Description
protected SBMLModel	SBMLGenericObject.sbmlModel	The sbml model.

Methods in de.unirostock.sems.bives.sbml.parser that return SBMLModel

Modifier and Type	Method	Description
SBMLModel	SBMLDocument.getModel()	Gets the model.
SBMLModel	SBMLGenericObject.getModel()	Gets the model.

Methods in de.unirostock.sems.bives.sbml.parser with parameters of type SBMLModel

Modifier and Type	Method	Description
static void	SBMLMeta.extractOntologyLinks(de.unirostock.sems.xmlutils.ds.DocumentNode rdf, SBMLModel model)	Extract ontology links from an annotation element.

Constructors in de.unirostock.sems.bives.sbml.parser with parameters of type SBMLModel

Constructor	Description
SBMLAlgebraicRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML algebraic rule.
SBMLAssignmentRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML assignment rule.
SBMLCompartment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML compartment.
SBMLCompartmentType(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML compartment type.
SBMLConstraint(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML constraint.
SBMLEvent(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new sBML event.
SBMLEventAssignment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event assignment.
SBMLEventDelay(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event delay.
SBMLEventPriority(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event priority.
SBMLEventTrigger(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event trigger.
SBMLFunctionDefinition(de.unirostock.sems.xmlutils.ds.DocumentNode functionDefinition, SBMLModel sbmlModel)	Instantiates a new SBML function definition.
SBMLGenericIdNameObject(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML generic id-name-object.
SBMLGenericObject(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new generic SBML object.
SBMLInitialAssignment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML initial assignment.
SBMLKineticLaw(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML kinetic law.
SBMLListOf(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML list of ...
SBMLParameter(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML parameter.
SBMLRateRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML rate rule.
SBMLReaction(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML reaction.
SBMLRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML rule.
SBMLSBase(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBMLS base.
SBMLSimpleSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML simple species reference.
SBMLSpecies(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species.
SBMLSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species reference.
SBMLSpeciesType(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species type.
SBMLUnit(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML unit derived from a base unit.
SBMLUnitDefinition(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML unit definition.
SBMLUnitDefinition(String name, SBMLModel sbmlModel)	Instantiates a new SBML base unit.