Uses of Class
de.unirostock.sems.bives.sbml.exception.BivesSBMLParseException

Packages that use BivesSBMLParseException

Package	Description
de.unirostock.sems.bives.sbml.api
de.unirostock.sems.bives.sbml.parser

Uses of BivesSBMLParseException in de.unirostock.sems.bives.sbml.api

Constructors in de.unirostock.sems.bives.sbml.api that throw BivesSBMLParseException

Constructor	Description
SBMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a, de.unirostock.sems.xmlutils.ds.TreeDocument b)	Instantiates a new SBML differ.
SBMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a, de.unirostock.sems.xmlutils.ds.TreeDocument b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new SBML differ.
SBMLDiff(File a, File b)	Instantiates a new SBML differ.
SBMLDiff(File a, File b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new SBML differ.
SBMLDiff(String a, String b)	Instantiates a new SBML differ.
SBMLDiff(String a, String b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new SBML differ.
SBMLSingle(de.unirostock.sems.xmlutils.ds.TreeDocument td)	Instantiates a new object.
SBMLSingle(File file)	Instantiates a new object to study single SBML documents.
SBMLSingle(String xml)	Instantiates a new object to study single SBML documents.

Uses of BivesSBMLParseException in de.unirostock.sems.bives.sbml.parser

Methods in de.unirostock.sems.bives.sbml.parser that throw BivesSBMLParseException

Modifier and Type	Method	Description
protected SBMLSBase	SBMLEventAssignment.resolveVariable(String ref)	Resolve variable.
protected SBMLSBase	SBMLRule.resolveVariable(String ref)	Resolves a variable.

Constructors in de.unirostock.sems.bives.sbml.parser that throw BivesSBMLParseException

Constructor	Description
SBMLAlgebraicRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML algebraic rule.
SBMLAssignmentRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML assignment rule.
SBMLCompartment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML compartment.
SBMLCompartmentType(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML compartment type.
SBMLConstraint(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML constraint.
SBMLDocument(de.unirostock.sems.xmlutils.ds.TreeDocument doc)	Instantiates a new SBML document.
SBMLEvent(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new sBML event.
SBMLEventAssignment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event assignment.
SBMLEventDelay(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event delay.
SBMLEventPriority(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event priority.
SBMLEventTrigger(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML event trigger.
SBMLFunctionDefinition(de.unirostock.sems.xmlutils.ds.DocumentNode functionDefinition, SBMLModel sbmlModel)	Instantiates a new SBML function definition.
SBMLGenericIdNameObject(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML generic id-name-object.
SBMLInitialAssignment(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML initial assignment.
SBMLKineticLaw(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML kinetic law.
SBMLListOf(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML list of ...
SBMLModel(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLDocument sbmlDocument)	Instantiates a new SBML model.
SBMLParameter(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML parameter.
SBMLRateRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML rate rule.
SBMLReaction(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML reaction.
SBMLRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML rule.
SBMLSBase(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBMLS base.
SBMLSimpleSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML simple species reference.
SBMLSpecies(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species.
SBMLSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species reference.
SBMLSpeciesType(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML species type.
SBMLUnit(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML unit derived from a base unit.
SBMLUnitDefinition(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)	Instantiates a new SBML unit definition.
SBMLUnitDefinition(String name, SBMLModel sbmlModel)	Instantiates a new SBML base unit.