Uses of Class
de.unirostock.sems.bives.sbml.parser.SBMLDocument

Packages that use SBMLDocument

Package	Description
de.unirostock.sems.bives.sbml.algorithm
de.unirostock.sems.bives.sbml.api
de.unirostock.sems.bives.sbml.parser

Uses of SBMLDocument in de.unirostock.sems.bives.sbml.algorithm

Methods in de.unirostock.sems.bives.sbml.algorithm that return SBMLDocument

Modifier and Type	Method	Description
SBMLDocument	SBMLValidator.getDocument()

Constructors in de.unirostock.sems.bives.sbml.algorithm with parameters of type SBMLDocument

Constructor	Description
SBMLConnector(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)	Instantiates a new SBML connector.
SBMLConnector(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB, boolean allowDifferentIds, boolean careAboutNames, boolean stricterNames)	Instantiates a new SBML connector.
SBMLConnectorPreprocessor(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)	Instantiates a new sBML connector preprocessor.
SBMLConnectorPreprocessor(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB, boolean allowDifferentIds, boolean careAboutNames, boolean stricterNames)	Instantiates a new sBML connector preprocessor.
SBMLDiffInterpreter(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)	Instantiates a new SBML diff interpreter.
SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)	Instantiates a new SBML graph producer for difference graphs.
SBMLGraphProducer(SBMLDocument sbmlDoc)	Instantiates a new SBML graph producer for single document graphs.

Uses of SBMLDocument in de.unirostock.sems.bives.sbml.api

Fields in de.unirostock.sems.bives.sbml.api declared as SBMLDocument

Modifier and Type	Field	Description
protected SBMLDocument	SBMLSingle.doc	The doc.
protected SBMLDocument	SBMLDiff.doc1	The original document.
protected SBMLDocument	SBMLDiff.doc2	The modified document.

Constructors in de.unirostock.sems.bives.sbml.api with parameters of type SBMLDocument

Constructor	Description
SBMLDiff(SBMLDocument a, SBMLDocument b)	Instantiates a new SBML differ.
SBMLDiff(SBMLDocument a, SBMLDocument b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new SBML differ.
SBMLSingle(SBMLDocument doc)	Instantiates a new object to study single SBML documents.

Uses of SBMLDocument in de.unirostock.sems.bives.sbml.parser

Methods in de.unirostock.sems.bives.sbml.parser that return SBMLDocument

Modifier and Type	Method	Description
SBMLDocument	SBMLModel.getDocument()	Gets the SBML document.

Constructors in de.unirostock.sems.bives.sbml.parser with parameters of type SBMLDocument

Constructor	Description
SBMLModel(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLDocument sbmlDocument)	Instantiates a new SBML model.