Package de.unirostock.sems.bives.sbml.algorithm

Class SBMLGraphProducer

java.lang.Object

de.unirostock.sems.bives.algorithm.GraphProducer

de.unirostock.sems.bives.sbml.algorithm.SBMLGraphProducer

public class SBMLGraphProducer
extends de.unirostock.sems.bives.algorithm.GraphProducer

The Class SBMLGraphProducer to create the graphs.

Author:

Martin Scharm

Field Summary

Fields inherited from class de.unirostock.sems.bives.algorithm.GraphProducer

hn, rn, single

Constructor Summary

Constructors

Constructor	Description
SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)	Instantiates a new SBML graph producer for difference graphs.
SBMLGraphProducer(SBMLDocument sbmlDoc)	Instantiates a new SBML graph producer for single document graphs.

Method Summary

Modifier and Type	Method	Description
protected void	processRnA()	Process Reaction Network of the original document.
protected void	processRnB()	Process Reaction Network of the modified document.
protected void	produceHierarchyGraph()
protected void	produceReactionNetwork()

Methods inherited from class de.unirostock.sems.bives.algorithm.GraphProducer

getCRN, getHierarchy, getReactionNetwork

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SBMLGraphProducer

public SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                         SBMLDocument sbmlDocA,
                         SBMLDocument sbmlDocB)

Instantiates a new SBML graph producer for difference graphs.

Parameters:

conMgmt - the connection manager

sbmlDocA - the original document

sbmlDocB - the modified document

SBMLGraphProducer

public SBMLGraphProducer(SBMLDocument sbmlDoc)

Instantiates a new SBML graph producer for single document graphs.

Parameters:

sbmlDoc - the SBML document

Method Detail

produceReactionNetwork

protected void produceReactionNetwork()

Specified by:

produceReactionNetwork in class de.unirostock.sems.bives.algorithm.GraphProducer

produceHierarchyGraph

protected void produceHierarchyGraph()

Specified by:

produceHierarchyGraph in class de.unirostock.sems.bives.algorithm.GraphProducer

processRnA

protected void processRnA()
                   throws de.unirostock.sems.bives.exception.BivesUnsupportedException

Process Reaction Network of the original document.

Throws:

de.unirostock.sems.bives.exception.BivesUnsupportedException - the bives unsupported exception

processRnB

protected void processRnB()
                   throws de.unirostock.sems.bives.exception.BivesUnsupportedException

Process Reaction Network of the modified document.

Throws:

de.unirostock.sems.bives.exception.BivesUnsupportedException - the bives unsupported exception