Hierarchy For All Packages

Package Hierarchies:

• de.unirostock.sems.bives.algorithm,
• de.unirostock.sems.bives.algorithm.general,
• de.unirostock.sems.bives.api,
• de.unirostock.sems.bives.ds,
• de.unirostock.sems.bives.ds.graph,
• de.unirostock.sems.bives.ds.hn,
• de.unirostock.sems.bives.ds.ontology,
• de.unirostock.sems.bives.ds.rdf,
• de.unirostock.sems.bives.ds.rn,
• de.unirostock.sems.bives.exception,
• de.unirostock.sems.bives.markup,
• de.unirostock.sems.bives.tools

Class Hierarchy

• java.lang.Object
  • de.unirostock.sems.bives.tools.BivesTools
  • de.unirostock.sems.bives.algorithm.Connector
    • de.unirostock.sems.bives.algorithm.general.IdConnector
    • de.unirostock.sems.bives.algorithm.general.LabelConnector
    • de.unirostock.sems.bives.algorithm.general.XyDiffConnector
  • de.unirostock.sems.bives.api.Diff
    • de.unirostock.sems.bives.api.RegularDiff
  • de.unirostock.sems.bives.algorithm.DiffAnnotator
    • de.unirostock.sems.bives.algorithm.general.DefaultDiffAnnotator
  • de.unirostock.sems.bives.algorithm.GraphProducer
  • de.unirostock.sems.bives.ds.graph.GraphTranslator
    • de.unirostock.sems.bives.ds.graph.GraphTranslatorDot
    • de.unirostock.sems.bives.ds.graph.GraphTranslatorGraphML
    • de.unirostock.sems.bives.ds.graph.GraphTranslatorJson
    • de.unirostock.sems.bives.ds.graph.GraphTranslatorSbgnJson
  • de.unirostock.sems.bives.ds.hn.HierarchyNetwork
  • de.unirostock.sems.bives.ds.hn.HierarchyNetworkEntity (implements de.unirostock.sems.bives.ds.GraphEntity)
    • de.unirostock.sems.bives.ds.hn.HierarchyNetworkComponent
    • de.unirostock.sems.bives.ds.hn.HierarchyNetworkVariable
  • de.unirostock.sems.bives.ds.hn.HierarchyNetworkVariable.VarConnection
  • de.unirostock.sems.bives.algorithm.Interpreter
  • de.unirostock.sems.bives.markup.MarkupDocument
  • de.unirostock.sems.bives.markup.MarkupElement
  • de.unirostock.sems.bives.markup.MarkupSection
  • de.unirostock.sems.bives.ds.MathML
  • de.unirostock.sems.bives.ds.ModelDocument
  • de.unirostock.sems.bives.algorithm.ModelValidator
  • de.unirostock.sems.bives.algorithm.NodeConnection (implements de.unirostock.sems.xmlutils.comparison.Connection)
  • de.unirostock.sems.bives.ds.Patch
  • de.unirostock.sems.bives.algorithm.Producer
    • de.unirostock.sems.bives.algorithm.general.PatchProducer
  • de.unirostock.sems.bives.ds.rdf.RDF
  • de.unirostock.sems.bives.ds.rdf.RDFDescription
  • de.unirostock.sems.bives.ds.rn.ReactionNetwork
  • de.unirostock.sems.bives.ds.rn.ReactionNetworkEntity (implements de.unirostock.sems.bives.ds.GraphEntity)
    • de.unirostock.sems.bives.ds.rn.ReactionNetworkCompartment
    • de.unirostock.sems.bives.ds.rn.ReactionNetworkReaction
    • de.unirostock.sems.bives.ds.rn.ReactionNetworkSubstance
  • de.unirostock.sems.bives.ds.rn.ReactionNetworkSubstanceRef (implements de.unirostock.sems.bives.ds.GraphEntity)
  • de.unirostock.sems.bives.ds.ontology.SBOTerm
  • de.unirostock.sems.bives.algorithm.SimpleConnectionManager (implements de.unirostock.sems.xmlutils.comparison.ConnectionManager)
  • de.unirostock.sems.bives.api.Single
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • de.unirostock.sems.bives.exception.BivesException
        • de.unirostock.sems.bives.exception.BivesConnectionException
        • de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
        • de.unirostock.sems.bives.exception.BivesFlattenException
        • de.unirostock.sems.bives.exception.BivesImportException
        • de.unirostock.sems.bives.exception.BivesLogicalException
        • de.unirostock.sems.bives.exception.BivesNetworkingException
        • de.unirostock.sems.bives.exception.BivesUnsupportedException
  • de.unirostock.sems.bives.markup.Typesetting
    • de.unirostock.sems.bives.markup.TypesettingHTML
    • de.unirostock.sems.bives.markup.TypesettingMarkDown
    • de.unirostock.sems.bives.markup.TypesettingReStructuredText
  • de.unirostock.sems.bives.ds.Xhtml

Interface Hierarchy

• de.unirostock.sems.bives.algorithm.DiffReporter
• de.unirostock.sems.bives.ds.GraphEntity
• de.unirostock.sems.bives.markup.Markup