de.unirostock.sems.bives.ds.graph

Class GraphTranslatorDot

java.lang.Object

de.unirostock.sems.bives.ds.graph.GraphTranslator

de.unirostock.sems.bives.ds.graph.GraphTranslatorDot

public class GraphTranslatorDot
extends GraphTranslator

The Class GraphTranslatorDot to translate internal graph structures into DOT format. (e.g. to create images using GraphViz) The resulting graph will look like:

 digraph BiVeSexport {
        graph [overlap=false];
        edge [len=1.3];
        node [fontsize=11];
        subgraph clusterc1 {
                label = "compartment";
                color=lightgrey;
                s2[label="sigb",shape=circle];
                s1[label="lacz",shape=circle];
                s4[label="x",shape=circle];
                s3[label="IPTG",shape=circle];
                r3[label="sigb degr",color=yellow,shape=diamond];
                r2[label="lacz degr",shape=diamond];
                r1[label="sigb syn",color=yellow,shape=diamond];
                r4[label="x syn",color=yellow,shape=diamond];
                r5[label="lacz syn",color=yellow,shape=diamond];
        }
        s2->r3;
        s4->r3[color=red,style=dashed,arrowType=normal];
        s4->r3[color=blue,style=dashed,arrowType=odot];
        s1->r2;
        r1->s2;
        s3->r1[color=red,style=dashed,arrowType=normal];
        s3->r1[color=blue,style=dashed,arrowType=odot];
        r4->s4;
        s2->r4[color=red,style=dashed,arrowType=normal];
        s2->r4[color=blue,style=dashed,arrowType=odot];
        r5->s1;
        s2->r5[color=red,style=dashed,arrowType=normal];
        s2->r5[color=blue,style=dashed,arrowType=odot];
        label="Diff Graph created by BiVeS";
 }
 

for more information see DotFormatDescription

Author:

Martin Scharm

Constructor Summary

Constructors

Constructor and Description
GraphTranslatorDot() Instantiates a new graph translator for DOT conversion.

Method Summary

Modifier and Type	Method and Description
String	translate(HierarchyNetwork hn) Translate a hierarchy network.
String	translate(ReactionNetwork rn) Translate a reaction network.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GraphTranslatorDot

public GraphTranslatorDot()

Instantiates a new graph translator for DOT conversion.

Method Detail

translate

public String translate(ReactionNetwork rn)

Description copied from class: GraphTranslator

Translate a reaction network. Might return null if not available.

Specified by:

translate in class GraphTranslator

Parameters:

rn - the internal reaction network

Returns:

the graph format

translate

public String translate(HierarchyNetwork hn)

Description copied from class: GraphTranslator

Translate a hierarchy network. Might return null if not available.

Specified by:

translate in class GraphTranslator

Parameters:

hn - the internal hierarchy network

Returns:

the graph format