de.unirostock.sems.bives.algorithm

Class GraphProducer

java.lang.Object

de.unirostock.sems.bives.algorithm.GraphProducer

public abstract class GraphProducer
extends Object

The Class GraphProducer to produce graphs from models.

Author:

Martin Scharm

Field Summary

Fields

Modifier and Type	Field and Description
protected HierarchyNetwork	hn The hierarchy network.
protected ReactionNetwork	rn The reaction network.
protected boolean	single The single flag.

Constructor Summary

Constructors

Constructor and Description
GraphProducer(boolean single) Instantiates a new graph producer.

Method Summary

Modifier and Type	Method and Description
ReactionNetwork	getCRN() Deprecated. As of 1.3.3 replaced by getReactionNetwork()
HierarchyNetwork	getHierarchy() Gets the hierarchy network graph.
ReactionNetwork	getReactionNetwork() Gets the reaction network graph.
protected abstract void	produceHierarchyGraph() Produce hierarchy graph.
protected abstract void	produceReactionNetwork() Produce the reaction network.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

single

protected boolean single

The single flag.

rn

protected ReactionNetwork rn

The reaction network.

hn

protected HierarchyNetwork hn

The hierarchy network.

Constructor Detail

GraphProducer

public GraphProducer(boolean single)

Instantiates a new graph producer.

Parameters:

single - the single flag

Method Detail

getCRN

@Deprecated
public ReactionNetwork getCRN()

Deprecated. As of 1.3.3 replaced by getReactionNetwork()

Gets the chemical reaction network graph. Calling it for the first time takes a bit longer to compute the network ;-) Might return null if not available.

Returns:

the produced chemical reaction network

getReactionNetwork

public ReactionNetwork getReactionNetwork()

Gets the reaction network graph. Calling it for the first time takes a bit longer to compute the network ;-) Might return null if not available.

Returns:

the produced reaction network

getHierarchy

public HierarchyNetwork getHierarchy()

Gets the hierarchy network graph. Calling it for the first time takes a bit longer to compute the network ;-) Might return null if not available.

Returns:

the hierarchy network

produceReactionNetwork

protected abstract void produceReactionNetwork()

Produce the reaction network.

produceHierarchyGraph

protected abstract void produceHierarchyGraph()

Produce hierarchy graph.