de.unirostock.sems.bives.ds.rn

Class ReactionNetworkEntity

java.lang.Object

de.unirostock.sems.bives.ds.rn.ReactionNetworkEntity

All Implemented Interfaces:

GraphEntity

Direct Known Subclasses:

ReactionNetworkCompartment, ReactionNetworkReaction, ReactionNetworkSubstance

public abstract class ReactionNetworkEntity
extends Object
implements GraphEntity

The Class ReactionNetworkEntity representing an entity in a reaction network.

Author:

Martin Scharm

Field Summary

Fields

Modifier and Type	Field and Description
protected de.unirostock.sems.xmlutils.ds.DocumentNode	docA The original document.
protected de.unirostock.sems.xmlutils.ds.DocumentNode	docB The modified document.
protected String	id The id of this entity.
protected String	labelA The labels in original doc.
protected String	labelB The labels in modified doc.
protected boolean	singleDoc The single doc flag if in single-doc-operation-mode.

Fields inherited from interface de.unirostock.sems.bives.ds.GraphEntity

DELETE, INSERT, MODIFIED, UNMODIFIED

Constructor Summary

Constructors

Constructor and Description
ReactionNetworkEntity(String entityId, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB) Instantiates a new entity.

Method Summary

Modifier and Type	Method and Description
de.unirostock.sems.xmlutils.ds.DocumentNode	getA() Gets the original document node.
de.unirostock.sems.xmlutils.ds.DocumentNode	getB() Gets the modified document node.
String	getId() Gets the id of the entity.
String	getLabel() Gets the label.
int	getModification() Gets the modification of this entity.
void	setDocA(de.unirostock.sems.xmlutils.ds.DocumentNode docA) Sets the original document node.
void	setDocB(de.unirostock.sems.xmlutils.ds.DocumentNode docB) Sets the modified document node.
void	setLabelA(String labelA) Sets the original label.
void	setLabelB(String labelB) Sets the modified label.
void	setSingleDocument() Sets the single document flag.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

id

protected String id

The id of this entity.

labelA

protected String labelA

The labels in original doc.

labelB

protected String labelB

The labels in modified doc.

docA

protected de.unirostock.sems.xmlutils.ds.DocumentNode docA

The original document.

docB

protected de.unirostock.sems.xmlutils.ds.DocumentNode docB

The modified document.

singleDoc

protected boolean singleDoc

The single doc flag if in single-doc-operation-mode.

Constructor Detail

ReactionNetworkEntity

public ReactionNetworkEntity(String entityId,
                             String labelA,
                             String labelB,
                             de.unirostock.sems.xmlutils.ds.DocumentNode docA,
                             de.unirostock.sems.xmlutils.ds.DocumentNode docB)

Instantiates a new entity.

Parameters:

entityId - the entity id

labelA - the label of that entity in the original document

labelB - the label of that entity in the modified document

docA - the original document

docB - the modified document

Method Detail

setDocA

public void setDocA(de.unirostock.sems.xmlutils.ds.DocumentNode docA)

Sets the original document node.

Parameters:

docA - the original document node

setLabelA

public void setLabelA(String labelA)

Sets the original label.

Parameters:

labelA - the label in the original document

setDocB

public void setDocB(de.unirostock.sems.xmlutils.ds.DocumentNode docB)

Sets the modified document node.

Parameters:

docB - the modified document node

setLabelB

public void setLabelB(String labelB)

Sets the modified label.

Parameters:

labelB - the label in the modified document

getA

public de.unirostock.sems.xmlutils.ds.DocumentNode getA()

Gets the original document node.

Returns:

the original document node

getB

public de.unirostock.sems.xmlutils.ds.DocumentNode getB()

Gets the modified document node.

Returns:

the modified document node

getId

public String getId()

Gets the id of the entity.

Returns:

the id

getLabel

public String getLabel()

Gets the label.

Returns:

the label

getModification

public int getModification()

Gets the modification of this entity.

Returns:

the modification

setSingleDocument

public void setSingleDocument()

Sets the single document flag.