org.sbgn

Enum GlyphClazz

java.lang.Object

java.lang.Enum<GlyphClazz>

org.sbgn.GlyphClazz

All Implemented Interfaces:

Serializable, Comparable<GlyphClazz>

public enum GlyphClazz
extends Enum<GlyphClazz>

Enumeration with all possible values for the class attribute of Glyphs in SBGN-ML. This includes both top-level glyphs and sub-glyphs.

The use of "zz" in the name GlyphClazz is not to be cute, but to correspond better with getClazz() and setClazz() methods on Glyph.

Enum Constant Summary

Enum Constants

Enum Constant and Description
AND
ANNOTATION
ASSOCIATION
BIOLOGICAL_ACTIVITY
CARDINALITY
COMPARTMENT
COMPLEX
COMPLEX_MULTIMER
DELAY
DISSOCIATION
ENTITY
EXISTENCE
IMPLICIT_XOR
INTERACTION
LOCATION
MACROMOLECULE
MACROMOLECULE_MULTIMER
NOT
NUCLEIC_ACID_FEATURE
NUCLEIC_ACID_FEATURE_MULTIMER
OBSERVABLE Deprecated. Observable was used in old versions of SBGN, but has been replaced with PHENOTYPE. However, because older versions of SBGN are supported by LibSBGN, this constant will never be removed.
OMITTED_PROCESS
OR
OUTCOME
PERTURBATION
PERTURBING_AGENT
PHENOTYPE
PROCESS
SIMPLE_CHEMICAL
SIMPLE_CHEMICAL_MULTIMER
SOURCE_AND_SINK
STATE_VARIABLE
STOICHIOMETRY Deprecated. By mistake, we used STOICHIOMETRY in instead of CARDINALITY in LibSBGN M1. We keep this constant here to support reading old documents. This constant will be removed in LibSBGN M3.
SUBMAP
TAG
TERMINAL
UNCERTAIN_PROCESS
UNIT_OF_INFORMATION
UNSPECIFIED_ENTITY
VARIABLE_VALUE

Method Summary

Modifier and Type	Method and Description
static GlyphClazz	fromClazz(String clazz)
String	getClazz()
String	toString()
static GlyphClazz	valueOf(String name) Returns the enum constant of this type with the specified name.
static GlyphClazz[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

UNSPECIFIED_ENTITY

public static final GlyphClazz UNSPECIFIED_ENTITY

SIMPLE_CHEMICAL

public static final GlyphClazz SIMPLE_CHEMICAL

MACROMOLECULE

public static final GlyphClazz MACROMOLECULE

NUCLEIC_ACID_FEATURE

public static final GlyphClazz NUCLEIC_ACID_FEATURE

SIMPLE_CHEMICAL_MULTIMER

public static final GlyphClazz SIMPLE_CHEMICAL_MULTIMER

MACROMOLECULE_MULTIMER

public static final GlyphClazz MACROMOLECULE_MULTIMER

NUCLEIC_ACID_FEATURE_MULTIMER

public static final GlyphClazz NUCLEIC_ACID_FEATURE_MULTIMER

COMPLEX

public static final GlyphClazz COMPLEX

COMPLEX_MULTIMER

public static final GlyphClazz COMPLEX_MULTIMER

SOURCE_AND_SINK

public static final GlyphClazz SOURCE_AND_SINK

PERTURBATION

public static final GlyphClazz PERTURBATION

BIOLOGICAL_ACTIVITY

public static final GlyphClazz BIOLOGICAL_ACTIVITY

PERTURBING_AGENT

public static final GlyphClazz PERTURBING_AGENT

COMPARTMENT

public static final GlyphClazz COMPARTMENT

SUBMAP

public static final GlyphClazz SUBMAP

TAG

public static final GlyphClazz TAG

TERMINAL

public static final GlyphClazz TERMINAL

PROCESS

public static final GlyphClazz PROCESS

OMITTED_PROCESS

public static final GlyphClazz OMITTED_PROCESS

UNCERTAIN_PROCESS

public static final GlyphClazz UNCERTAIN_PROCESS

ASSOCIATION

public static final GlyphClazz ASSOCIATION

DISSOCIATION

public static final GlyphClazz DISSOCIATION

PHENOTYPE

public static final GlyphClazz PHENOTYPE

AND

public static final GlyphClazz AND

OR

public static final GlyphClazz OR

NOT

public static final GlyphClazz NOT

STATE_VARIABLE

public static final GlyphClazz STATE_VARIABLE

UNIT_OF_INFORMATION

public static final GlyphClazz UNIT_OF_INFORMATION

STOICHIOMETRY

public static final GlyphClazz STOICHIOMETRY

Deprecated. By mistake, we used STOICHIOMETRY in instead of CARDINALITY in LibSBGN M1. We keep this constant here to support reading old documents. This constant will be removed in LibSBGN M3.

ENTITY

public static final GlyphClazz ENTITY

OUTCOME

public static final GlyphClazz OUTCOME

OBSERVABLE

public static final GlyphClazz OBSERVABLE

Deprecated. Observable was used in old versions of SBGN, but has been replaced with PHENOTYPE. However, because older versions of SBGN are supported by LibSBGN, this constant will never be removed.

INTERACTION

public static final GlyphClazz INTERACTION

ANNOTATION

public static final GlyphClazz ANNOTATION

VARIABLE_VALUE

public static final GlyphClazz VARIABLE_VALUE

IMPLICIT_XOR

public static final GlyphClazz IMPLICIT_XOR

DELAY

public static final GlyphClazz DELAY

EXISTENCE

public static final GlyphClazz EXISTENCE

LOCATION

public static final GlyphClazz LOCATION

CARDINALITY

public static final GlyphClazz CARDINALITY

Method Detail

values

public static GlyphClazz[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GlyphClazz c : GlyphClazz.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GlyphClazz valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getClazz

public String getClazz()

toString

public String toString()

Overrides:

toString in class Enum<GlyphClazz>

fromClazz

public static GlyphClazz fromClazz(String clazz)