ComodiTarget (jCOMODI 1.0.1 API)

java.lang.Object
- de.unirostock.sems.comodi.ComodiBranchTerm
- - de.unirostock.sems.comodi.branches.ComodiTarget

```
public class ComodiTarget
extends ComodiBranchTerm
```
The Class ComodiTarget creating terms of COMODI's Target branch.

Author:

Martin Scharm

See Also:

target definition

Constructor Summary

Constructors
Modifier Constructor and Description

protected ComodiTarget(String term)
The Constructor -- just to call the constructor of the super class.

Constructors
Modifier	Constructor and Description
`protected`	`ComodiTarget(String term)` The Constructor -- just to call the constructor of the super class.

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static ComodiTarget`	`getAnnotationEncoding()` Gets the term representing an annotation scheme.
`static ComodiTarget`	`getAttribution()` Gets the term representing an attribution.
`static ComodiTarget`	`getComponentDefinition()` Gets the term representing a component definition.
`static ComodiTarget`	`getContributor()` Gets the term representing a contributor.
`static ComodiTarget`	`getCreationDate()` Gets the term representing a creation date.
`static ComodiTarget`	`getCreator()` Gets the term representing a creator.
`static ComodiTarget`	`getDate()` Gets the term representing a date.
`static ComodiTarget`	`getEventDefinition()` Gets the term representing an event definition.
`static ComodiTarget`	`getFunctionDefinition()` Gets the term representing a function definition.
`static ComodiTarget`	`getHierarchyDefinition()` Gets the term representing the hierarchy of, eg., components or compartments.
`static ComodiTarget`	`getIdentifierEncoding()` Gets the term representing an identifiers scheme.
`static ComodiTarget`	`getKineticsDefinition()` Gets the term representing defintion of some kinetics.
`static ComodiTarget`	`getMathematicalModelDefinition()` Gets the term representing the mathematical model.
`static ComodiTarget`	`getMetaIdEncoding()` Gets the term representing the meta identifier.
`static ComodiTarget`	`getModelAnnotation()` Gets the term representing the annotation layer of a model document.
`static ComodiTarget`	`getModelBehaviour()` Gets the term representing the behaviour of the encoded system.
`static ComodiTarget`	`getModelDefinition()` Gets the term representing the definition of the actual system.
`static ComodiTarget`	`getModelEncoding()` Gets the term representing the document layout.
`static ComodiTarget`	`getModelSetup()` Gets the term representing the setup of the encoded system.
`static ComodiTarget`	`getModificationDate()` Gets the term representing a modification date.
`static ComodiTarget`	`getNetworkDefinition()` Gets the term representing the network definition.
`static ComodiTarget`	`getOntologyReference()` Gets the term representing an ontology reference.
`static ComodiTarget`	`getParameterSetup()` Gets the term representing the setup of a parameter.
`static ComodiTarget`	`getParticipantDefinition()` Gets the term representing a participant in the reaction network.
`static ComodiTarget`	`getPerson()` Gets the term representing a person.
`static ComodiTarget`	`getPortDefinition()` Gets the term representing a port definition.
`static ComodiTarget`	`getReactionDefinition()` Gets the term representing a reaction definition.
`static ComodiTarget`	`getReactionNetworkDefinition()` Gets the term representing the reaction network.
`static ComodiTarget`	`getReversibilityDefinition()` Gets the term representing a reaction reversibility.
`static ComodiTarget`	`getRuleDefinition()` Gets the term representing a rule definition.
`static ComodiTarget`	`getSpeciesSetup()` Gets the term representing the setup of a species.
`static ComodiTarget`	`getTextualDescription()` Gets the term representing a textual description.
`static ComodiTarget`	`getUnitDefinition()` Gets the term representing an unit definition.
`static ComodiTarget`	`getVariableConnectionDefinition()` Gets the term representing a variable connections.
`static ComodiTarget`	`getVariableSetup()` Gets the term representing the setup of a variable.
`static ComodiTarget`	`getVcardEncoding()` Gets the term representing the VCard scheme.

Methods inherited from class de.unirostock.sems.comodi.ComodiBranchTerm
getTerm

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ComodiTarget
```
protected ComodiTarget(String term)
```
    The Constructor -- just to call the constructor of the super class.
    
    Parameters:
    
    term - the term
- Method Detail
  - getModelAnnotation
```
public static ComodiTarget getModelAnnotation()
```
    Gets the term representing the annotation layer of a model document.
```
 ModelAnnotation -> Target
 
```
    Returns:
    
    the model annotation term
    
    See Also:
    
    term definition
  - getCreationDate
```
public static ComodiTarget getCreationDate()
```
    Gets the term representing a creation date.
```
 CreationDate -> Date -> ModelAnnotation -> Target
 
```
    Returns:
    
    the creation date term
    
    See Also:
    
    term definition
  - getModificationDate
```
public static ComodiTarget getModificationDate()
```
    Gets the term representing a modification date.
```
 ModificationDate -> Date -> ModelAnnotation -> Target
 
```
    Returns:
    
    the modification date term
    
    See Also:
    
    term definition
  - getDate
```
public static ComodiTarget getDate()
```
    Gets the term representing a date.
```
 Date -> ModelAnnotation -> Target
 
```
    Returns:
    
    the date term
    
    See Also:
    
    term definition
  - getOntologyReference
```
public static ComodiTarget getOntologyReference()
```
    Gets the term representing an ontology reference.
```
 OntologyReference -> ModelAnnotation -> Target
 
```
    Returns:
    
    the ontology reference term
    
    See Also:
    
    term definition
  - getTextualDescription
```
public static ComodiTarget getTextualDescription()
```
    Gets the term representing a textual description.
```
 TextualDescription -> ModelAnnotation -> Target
 
```
    Returns:
    
    the textual description term
    
    See Also:
    
    term definition
  - getPerson
```
public static ComodiTarget getPerson()
```
    Gets the term representing a person.
```
 Person -> ModelAnnotation -> Target
 
```
    Returns:
    
    the person term
    
    See Also:
    
    term definition
  - getContributor
```
public static ComodiTarget getContributor()
```
    Gets the term representing a contributor.
```
 Contributor -> Person -> ModelAnnotation -> Target
 
```
    Returns:
    
    the contributor term
    
    See Also:
    
    term definition
  - getCreator
```
public static ComodiTarget getCreator()
```
    Gets the term representing a creator.
```
 Creator -> Contributor -> Person -> ModelAnnotation -> Target
 
```
    Returns:
    
    the creator term
    
    See Also:
    
    term definition
  - getAttribution
```
public static ComodiTarget getAttribution()
```
    Gets the term representing an attribution.
```
 Attribution -> TextualDescription -> ModelAnnotation -> Target
 
```
    Returns:
    
    the attribution term
    
    See Also:
    
    term definition
  - getModelEncoding
```
public static ComodiTarget getModelEncoding()
```
    Gets the term representing the document layout.
```
 ModelEncoding -> Target
 
```
    Returns:
    
    the model encoding term
    
    See Also:
    
    term definition
  - getAnnotationEncoding
```
public static ComodiTarget getAnnotationEncoding()
```
    Gets the term representing an annotation scheme.
```
 AnnotationEncoding -> ModelEncoding -> Target
 
```
    Returns:
    
    the annotation encoding term
    
    See Also:
    
    term definition
  - getIdentifierEncoding
```
public static ComodiTarget getIdentifierEncoding()
```
    Gets the term representing an identifiers scheme.
```
 IdentifierEncoding -> ModelEncoding -> Target
 
```
    Returns:
    
    the identifier encoding term
    
    See Also:
    
    term definition
  - getMetaIdEncoding
```
public static ComodiTarget getMetaIdEncoding()
```
    Gets the term representing the meta identifier.
```
 MetaIdEncoding -> IdentifierEncoding -> ModelEncoding -> Target
 
```
    Returns:
    
    the meta identifier term
    
    See Also:
    
    term definition
  - getVcardEncoding
```
public static ComodiTarget getVcardEncoding()
```
    Gets the term representing the VCard scheme.
```
 VcardEncoding -> AnnotationEncoding -> ModelEncoding -> Target
 
```
    Returns:
    
    the VCard encoding term
    
    See Also:
    
    term definition
  - getModelBehaviour
```
public static ComodiTarget getModelBehaviour()
```
    Gets the term representing the behaviour of the encoded system.
```
 ModelBehaviour -> Target
 
```
    Returns:
    
    the model behaviour term
    
    See Also:
    
    term definition
  - getModelSetup
```
public static ComodiTarget getModelSetup()
```
    Gets the term representing the setup of the encoded system.
```
 ModelSetup -> Target
 
```
    Returns:
    
    the encoded system term
    
    See Also:
    
    term definition
  - getVariableSetup
```
public static ComodiTarget getVariableSetup()
```
    Gets the term representing the setup of a variable.
```
 VariableSetup -> ModelSetup -> Target
 
```
    Returns:
    
    the variable setup term
    
    See Also:
    
    term definition
  - getSpeciesSetup
```
public static ComodiTarget getSpeciesSetup()
```
    Gets the term representing the setup of a species.
```
 SpeciesSetup -> ModelSetup -> Target
 
```
    Returns:
    
    the species setup term
    
    See Also:
    
    term definition
  - getParameterSetup
```
public static ComodiTarget getParameterSetup()
```
    Gets the term representing the setup of a parameter.
```
 ParameterSetup -> ModelSetup -> Target
 
```
    Returns:
    
    the parameter setup term
    
    See Also:
    
    term definition
  - getModelDefinition
```
public static ComodiTarget getModelDefinition()
```
    Gets the term representing the definition of the actual system.
```
 ModelDefinition -> Target
 
```
    Returns:
    
    the encoded system term
    
    See Also:
    
    term definition
  - getMathematicalModelDefinition
```
public static ComodiTarget getMathematicalModelDefinition()
```
    Gets the term representing the mathematical model.
```
 MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the mathematical model term
    
    See Also:
    
    term definition
  - getComponentDefinition
```
public static ComodiTarget getComponentDefinition()
```
    Gets the term representing a component definition.
```
 ComponentDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the component definition term
    
    See Also:
    
    term definition
  - getEventDefinition
```
public static ComodiTarget getEventDefinition()
```
    Gets the term representing an event definition.
```
 EventDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the event definition term
    
    See Also:
    
    term definition
  - getFunctionDefinition
```
public static ComodiTarget getFunctionDefinition()
```
    Gets the term representing a function definition.
```
 FunctionDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the function definition term
    
    See Also:
    
    term definition
  - getKineticsDefinition
```
public static ComodiTarget getKineticsDefinition()
```
    Gets the term representing defintion of some kinetics.
```
 KineticsDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the kinetics definition term
    
    See Also:
    
    term definition
  - getRuleDefinition
```
public static ComodiTarget getRuleDefinition()
```
    Gets the term representing a rule definition.
```
 RuleDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the rule definition term
    
    See Also:
    
    term definition
  - getUnitDefinition
```
public static ComodiTarget getUnitDefinition()
```
    Gets the term representing an unit definition.
```
 UnitDefinition -> MathematicalModelDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the unit definition term
    
    See Also:
    
    term definition
  - getNetworkDefinition
```
public static ComodiTarget getNetworkDefinition()
```
    Gets the term representing the network definition.
```
 NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the network definition term
    
    See Also:
    
    term definition
  - getHierarchyDefinition
```
public static ComodiTarget getHierarchyDefinition()
```
    Gets the term representing the hierarchy of, eg., components or compartments.
```
 HierarchyDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the hierarchy definition term
    
    See Also:
    
    term definition
  - getReactionNetworkDefinition
```
public static ComodiTarget getReactionNetworkDefinition()
```
    Gets the term representing the reaction network.
```
 ReactionNetworkDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the reaction network term
    
    See Also:
    
    term definition
  - getVariableConnectionDefinition
```
public static ComodiTarget getVariableConnectionDefinition()
```
    Gets the term representing a variable connections.
```
 VariableConnectionDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the variable connections term
    
    See Also:
    
    term definition
  - getReactionDefinition
```
public static ComodiTarget getReactionDefinition()
```
    Gets the term representing a reaction definition.
```
 ReactionDefinition -> ReactionNetworkDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the reaction definition term
    
    See Also:
    
    term definition
  - getReversibilityDefinition
```
public static ComodiTarget getReversibilityDefinition()
```
    Gets the term representing a reaction reversibility.
```
 ReversibilityDefinition -> ReactionDefinition -> ReactionNetworkDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the reaction reversibility term
    
    See Also:
    
    term definition
  - getParticipantDefinition
```
public static ComodiTarget getParticipantDefinition()
```
    Gets the term representing a participant in the reaction network.
```
 ParticipantDefinition -> ReactionNetworkDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the participant term
    
    See Also:
    
    term definition
  - getPortDefinition
```
public static ComodiTarget getPortDefinition()
```
    Gets the term representing a port definition.
```
 PortDefinition -> NetworkDefinition -> ModelDefinition -> Target
 
```
    Returns:
    
    the port definition term
    
    See Also:
    
    term definition

Class ComodiTarget

Constructor Summary

Method Summary

Methods inherited from class de.unirostock.sems.comodi.ComodiBranchTerm

Methods inherited from class java.lang.Object

Constructor Detail

ComodiTarget

Method Detail

getModelAnnotation

getCreationDate

getModificationDate

getDate

getOntologyReference

getTextualDescription

getPerson

getContributor

getCreator

getAttribution

getModelEncoding

getAnnotationEncoding

getIdentifierEncoding

getMetaIdEncoding

getVcardEncoding

getModelBehaviour

getModelSetup

getVariableSetup

getSpeciesSetup

getParameterSetup

getModelDefinition

getMathematicalModelDefinition

getComponentDefinition

getEventDefinition

getFunctionDefinition

getKineticsDefinition

getRuleDefinition

getUnitDefinition

getNetworkDefinition

getHierarchyDefinition

getReactionNetworkDefinition

getVariableConnectionDefinition

getReactionDefinition

getReversibilityDefinition

getParticipantDefinition

getPortDefinition