de.unirostock.sems.ModelCrawler.databases.BioModelsDb

Class BioModelsDb

java.lang.Object

de.unirostock.sems.ModelCrawler.databases.Interface.ModelDatabase

de.unirostock.sems.ModelCrawler.databases.BioModelsDb.BioModelsDb

All Implemented Interfaces:

Closeable, Serializable, AutoCloseable, Callable<Map<String,ChangeSet>>

public class BioModelsDb
extends ModelDatabase

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class de.unirostock.sems.ModelCrawler.databases.Interface.ModelDatabase

ModelDatabase.DatabaseTypes

Field Summary

Fields

Modifier and Type	Field and Description
protected Map<String,ChangeSet>	changeSetMap
protected de.unirostock.sems.ModelCrawler.databases.BioModelsDb.BioModelsDb.WorkingDirConfig	config

Fields inherited from class de.unirostock.sems.ModelCrawler.databases.Interface.ModelDatabase

enabled, limit, modelStorage, morreClient, tempDir

Constructor Summary

Constructors

Constructor and Description
BioModelsDb() Default empty constructor

Method Summary

Modifier and Type	Method and Description
Map<String,ChangeSet>	call() Starts the process of crawling for this specific Database.
void	close() Cleans up the working directory
protected void	connect()
protected void	disconnect()
URL	getFtpUrl()
ChangeSet	getModelChanges(String fileId) Returns the ChangeSet only for one specific model.
protected void	init()
Map<String,ChangeSet>	listChanges() Returns a map with all changes made after the last crawl the fileId is the map key.
List<String>	listModels() lists all Models in the latest revision
protected void	processRelease(BioModelRelease release) Downloads, extracts and indexes the gives release must called for each new release CHRONOLOGICAL.
protected List<BioModelRelease>	retrieveReleaseList()
protected void	saveProperties()
void	setFtpUrl(URL ftpUrl)

Methods inherited from class de.unirostock.sems.ModelCrawler.databases.Interface.ModelDatabase

createTempDir, getLimit, getModelStorage, getMorreClient, getWorkingDir, isEnabled, obtainWorkingDir, setEnabled, setLimit, setModelStorage, setMorreClient, setWorkingDir

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

changeSetMap

protected Map<String,ChangeSet> changeSetMap

config

protected de.unirostock.sems.ModelCrawler.databases.BioModelsDb.BioModelsDb.WorkingDirConfig config

Constructor Detail

BioModelsDb

public BioModelsDb()

Default empty constructor

Method Detail

listModels

public List<String> listModels()

Description copied from class: ModelDatabase

lists all Models in the latest revision

Specified by:

listModels in class ModelDatabase

Returns:

List with all model IDs

listChanges

public Map<String,ChangeSet> listChanges()

Description copied from class: ModelDatabase

Returns a map with all changes made after the last crawl
the fileId is the map key.

Specified by:

listChanges in class ModelDatabase

Returns:

the list of changes

getModelChanges

public ChangeSet getModelChanges(String fileId)

Description copied from class: ModelDatabase

Returns the ChangeSet only for one specific model.

Specified by:

getModelChanges in class ModelDatabase

Parameters:

fileId - the file id

Returns:

ChangeSet

close

public void close()

Description copied from class: ModelDatabase

Cleans up the working directory

Specified by:

close in interface Closeable

Specified by:

close in interface AutoCloseable

Specified by:

close in class ModelDatabase

call

public Map<String,ChangeSet> call()

Description copied from class: ModelDatabase

Starts the process of crawling for this specific Database.

Specified by:

call in interface Callable<Map<String,ChangeSet>>

Specified by:

call in class ModelDatabase

Returns:

the map of files and changes

processRelease

protected void processRelease(BioModelRelease release)

Downloads, extracts and indexes the gives release must called for each new release CHRONOLOGICAL.

Parameters:

release - the release

init

protected void init()

saveProperties

protected void saveProperties()

connect

protected void connect()
                throws FtpConnectionException,
                       IOException,
                       SocketException

Throws:

FtpConnectionException

IOException

SocketException

disconnect

protected void disconnect()

retrieveReleaseList

protected List<BioModelRelease> retrieveReleaseList()
                                             throws IOException

Throws:

IOException

getFtpUrl

public URL getFtpUrl()

setFtpUrl

public void setFtpUrl(URL ftpUrl)