A B C D E F G H I J L M N O P R S T U V

A

abstractText - Variable in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

addAdditionalFile(AdditionalFileInformation) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

addExecuteAfter(RetrievalJob) - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

Adds a Job, executed after this job.

AdditionalFileInformation - Class in de.unirostock.sems.M2CAT.datamodel.information

AdditionalFileInformation(String, URI, MetaData) - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

AdditionalFileInformation() - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

additionFiles - Variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

addRetrievalJob(RetrievalJob) - Method in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

Adds a job and all "executed after" jobs to this retrival cache.

ArchiveCache - Class in de.unirostock.sems.M2CAT

Cache for already retrieved models

archiveInformation - Variable in class de.unirostock.sems.M2CAT.connector.RetrievalJob

ArchiveInformation - Class in de.unirostock.sems.M2CAT.datamodel

ArchiveInformation() - Constructor for class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

archiveInformation - Variable in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

ArchiveInformation.REPOSITORY_TYPE - Class in de.unirostock.sems.M2CAT.datamodel

assemble(String) - Method in class de.unirostock.sems.M2CAT.RetrievalFactory

B

BmdbConnector - Class in de.unirostock.sems.M2CAT.connector.bmdb

BmdbConnector() - Constructor for class de.unirostock.sems.M2CAT.connector.bmdb.BmdbConnector

buildErrorResponse(int, String...) - Method in class de.unirostock.sems.M2CAT.rest.ResultRestApi

Generates an error response.

C

CachedArchiveInfo - Class in de.unirostock.sems.M2CAT.datamodel

Class representing a cached retrieved Archive

CachedArchiveInfo(ArchiveInformation, Date) - Constructor for class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

CachedArchiveInfo(ArchiveInformation) - Constructor for class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

Config - Class in de.unirostock.sems.M2CAT

connector - Variable in class de.unirostock.sems.M2CAT.connector.RetrievalJob

D

date - Variable in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

de.unirostock.sems.M2CAT - package de.unirostock.sems.M2CAT

de.unirostock.sems.M2CAT.beans - package de.unirostock.sems.M2CAT.beans

de.unirostock.sems.M2CAT.connector - package de.unirostock.sems.M2CAT.connector

de.unirostock.sems.M2CAT.connector.bmdb - package de.unirostock.sems.M2CAT.connector.bmdb

de.unirostock.sems.M2CAT.connector.masymos - package de.unirostock.sems.M2CAT.connector.masymos

de.unirostock.sems.M2CAT.connector.pmr2 - package de.unirostock.sems.M2CAT.connector.pmr2

de.unirostock.sems.M2CAT.connector.publication - package de.unirostock.sems.M2CAT.connector.publication

de.unirostock.sems.M2CAT.datamodel - package de.unirostock.sems.M2CAT.datamodel

de.unirostock.sems.M2CAT.datamodel.information - package de.unirostock.sems.M2CAT.datamodel.information

de.unirostock.sems.M2CAT.datamodel.meta - package de.unirostock.sems.M2CAT.datamodel.meta

de.unirostock.sems.M2CAT.datamodel.rest - package de.unirostock.sems.M2CAT.datamodel.rest

de.unirostock.sems.M2CAT.executor - package de.unirostock.sems.M2CAT.executor

de.unirostock.sems.M2CAT.rest - package de.unirostock.sems.M2CAT.rest

de.unirostock.sems.M2CAT.servlet - package de.unirostock.sems.M2CAT.servlet

DEFAULT_PRIORITY - Static variable in class de.unirostock.sems.M2CAT.RetrievalFactory

DefaultNameTransformer() - Constructor for class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.DefaultNameTransformer

destroy() - Method in class de.unirostock.sems.M2CAT.servlet.DispatcherServlet

DispatcherServlet - Class in de.unirostock.sems.M2CAT.servlet

DispatcherServlet() - Constructor for class de.unirostock.sems.M2CAT.servlet.DispatcherServlet

doAggregatedSearch() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

documentURI - Variable in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

doGet(HttpServletRequest, HttpServletResponse) - Method in class de.unirostock.sems.M2CAT.servlet.DispatcherServlet

doGet(HttpServletRequest, HttpServletResponse) - Method in class de.unirostock.sems.M2CAT.servlet.DownloadServlet

doPost(HttpServletRequest, HttpServletResponse) - Method in class de.unirostock.sems.M2CAT.servlet.DispatcherServlet

doSearch() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

DownloadServlet - Class in de.unirostock.sems.M2CAT.servlet

DownloadServlet() - Constructor for class de.unirostock.sems.M2CAT.servlet.DownloadServlet

E

equals(Object) - Method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.ImportVCard

ERROR - Static variable in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

execute(PriorityJob) - Method in class de.unirostock.sems.M2CAT.executor.PriorityThreadPoolExecutor

executeAfter - Variable in class de.unirostock.sems.M2CAT.connector.RetrievalJob

F

FILE_NORMAL - Static variable in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

FILE_PUBLICATION - Static variable in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

fileName - Variable in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

fileSource - Variable in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

FINISHED - Static variable in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

G

gatherInformation() - Method in class de.unirostock.sems.M2CAT.beans.ModelResult

get(String) - Method in class de.unirostock.sems.M2CAT.ArchiveCache

Returns archiveInformation for the given id, or null.

getAbstractText() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getAdditionFiles() - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

getAggregationType() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getAnnotationRankerWeight() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getArchiveInformation() - Method in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

getAuthors() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getCombineArchiveMetaData() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.MetaData

getCombineArchiveMetaData() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

getConfig() - Static method in class de.unirostock.sems.M2CAT.Config

getCreated() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

getCreators() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

getCurrentUrl(HttpServletRequest) - Static method in class de.unirostock.sems.M2CAT.Util

reconstructs the current request url.

getDatabaseSession() - Method in class de.unirostock.sems.M2CAT.Config

getDate() - Method in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

getDescription() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

getDocumentURI() - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

getEmail(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.DefaultNameTransformer

getException() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

Returns the exception caused by this job or null.

getExecutedAfter() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

getExecutor() - Method in class de.unirostock.sems.M2CAT.Config

getFamilyName(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.DefaultNameTransformer

getFamilyName(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.GitNameTransformer

getFeedbackUrl() - Method in class de.unirostock.sems.M2CAT.Config

getFeedbackUrl(HttpServletRequest) - Static method in class de.unirostock.sems.M2CAT.Util

Returns the feedbackUrl if set, otherwise null substitutes the first parameter with the url encoded request uri, if request != null.

getFileName() - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

getFileSource() - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

getGit(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector

getGivenName(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.DefaultNameTransformer

getGivenName(String) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.GitNameTransformer

getId() - Method in class de.unirostock.sems.M2CAT.beans.ModelResult

getId() - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

getIdFromResult(ModelResult) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getInfo(String) - Method in class de.unirostock.sems.M2CAT.rest.ResultRestApi

getInstance() - Static method in class de.unirostock.sems.M2CAT.ArchiveCache

getInstance() - Static method in class de.unirostock.sems.M2CAT.RetrievalFactory

getJobs() - Method in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

getJournal() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getMetaData() - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

getMetaData() - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

getModel() - Method in class de.unirostock.sems.M2CAT.beans.ModelResult

getModel() - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

getModelId() - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

getModelName() - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

getModelRankerWeight() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getModified() - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

getMorreUrl() - Method in class de.unirostock.sems.M2CAT.Config

getNeo4jUrl() - Method in class de.unirostock.sems.M2CAT.Config

getParam(ServletContext, String, String) - Static method in class de.unirostock.sems.M2CAT.Util

Returns the context init parameter key or defaultValue.

getParam(ServletContext, String, long) - Static method in class de.unirostock.sems.M2CAT.Util

Returns the context init parameter key or defaultValue.

getParam(ServletContext, String, double) - Static method in class de.unirostock.sems.M2CAT.Util

Returns the context init parameter key or defaultValue.

getPersonRankerWeight() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getPriority() - Method in class de.unirostock.sems.M2CAT.executor.PriorityJob

getProcess() - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

getPublicationRankerWeight() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getPubmedUrn() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getRepositoryType() - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

getRepositoryUrl() - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

getRequest() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getResponseCode(URI) - Static method in class de.unirostock.sems.M2CAT.connector.bmdb.BmdbConnector

getResponseState(String) - Method in class de.unirostock.sems.M2CAT.rest.ResultRestApi

getResultCount() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getResults() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

getSourceStream() - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

getSourceStream() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getStarted() - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

getState() - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

getTempFilePrefix() - Method in class de.unirostock.sems.M2CAT.Config

getThreadPoolKeepAliveTime() - Method in class de.unirostock.sems.M2CAT.Config

getThreadPoolMaxSize() - Method in class de.unirostock.sems.M2CAT.Config

getThreadPoolSize() - Method in class de.unirostock.sems.M2CAT.Config

getTitle() - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

getWebCatUrl() - Method in class de.unirostock.sems.M2CAT.Config

GIT - Static variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation.REPOSITORY_TYPE

GitNameTransformer() - Constructor for class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.GitNameTransformer

H

hasError() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

Returns true, if the job had thrown an exception.

hashCode() - Method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.ImportVCard

HTTP - Static variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation.REPOSITORY_TYPE

I

id - Variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

ImportVCard(PersonIdent) - Constructor for class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.ImportVCard

Generates a VCard from a JGit PersonIdent.

ImportVCard(String) - Constructor for class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector.ImportVCard

Generates a VCard from a default mail string

Given-Name Family-Name <mail@example.org>
Given-Name Family-Name

init(ServletConfig) - Method in class de.unirostock.sems.M2CAT.servlet.DispatcherServlet

isAvailable(String) - Method in class de.unirostock.sems.M2CAT.ArchiveCache

Checks if an archive is available in the cache aka.

isEmpty() - Method in class de.unirostock.sems.M2CAT.datamodel.VCard

isFinished(String) - Method in class de.unirostock.sems.M2CAT.ArchiveCache

Checks if an archive retrieval job is finished.

isFinished() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

Returns true, if the job has finished.

isFinished() - Method in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

Returns true, if all jobs are finished.

isSufficient() - Method in class de.unirostock.sems.M2CAT.datamodel.VCard

Checks if given and family name is set.

isValid() - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

J

jobException - Variable in class de.unirostock.sems.M2CAT.connector.RetrievalJob

jobs - Variable in class de.unirostock.sems.M2CAT.datamodel.CachedArchiveInfo

journal - Variable in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

L

loadConfig(ServletContext) - Static method in class de.unirostock.sems.M2CAT.Config

M

MasymosConnector - Class in de.unirostock.sems.M2CAT.connector.masymos

MasymosConnector() - Constructor for class de.unirostock.sems.M2CAT.connector.masymos.MasymosConnector

MAX_PRIORITY - Static variable in class de.unirostock.sems.M2CAT.executor.PriorityJob

META_OMEX - Static variable in class de.unirostock.sems.M2CAT.datamodel.meta.MetaData

metaData - Variable in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

metaData - Variable in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

MetaData - Class in de.unirostock.sems.M2CAT.datamodel.meta

MetaData() - Constructor for class de.unirostock.sems.M2CAT.datamodel.meta.MetaData

MIN_PRIORITY - Static variable in class de.unirostock.sems.M2CAT.executor.PriorityJob

model - Variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

modelId - Variable in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

ModelInformation - Class in de.unirostock.sems.M2CAT.datamodel.information

ModelInformation(String, String, URI, MetaData) - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

ModelInformation() - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

modelName - Variable in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

ModelResult - Class in de.unirostock.sems.M2CAT.beans

ModelResult() - Constructor for class de.unirostock.sems.M2CAT.beans.ModelResult

MorreSearch - Class in de.unirostock.sems.M2CAT.beans

MorreSearch() - Constructor for class de.unirostock.sems.M2CAT.beans.MorreSearch

N

NONE - Static variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation.REPOSITORY_TYPE

O

OmexMetaData - Class in de.unirostock.sems.M2CAT.datamodel.meta

OmexMetaData() - Constructor for class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

P

Pmr2Connector - Class in de.unirostock.sems.M2CAT.connector.pmr2

Pmr2Connector() - Constructor for class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector

Pmr2Connector.DefaultNameTransformer - Class in de.unirostock.sems.M2CAT.connector.pmr2

Pmr2Connector.GitNameTransformer - Class in de.unirostock.sems.M2CAT.connector.pmr2

Pmr2Connector.ImportVCard - Class in de.unirostock.sems.M2CAT.connector.pmr2

Wrapper class for VCard datamodel, adding equals and hashCode for better determination in HashMaps/-Sets

Pmr2Exception - Exception in de.unirostock.sems.M2CAT.connector.pmr2

Pmr2Exception() - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Exception

Pmr2Exception(String, Throwable) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Exception

Pmr2Exception(String) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Exception

Pmr2Exception(Throwable) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Exception

Pmr2ImporterException - Exception in de.unirostock.sems.M2CAT.connector.pmr2

Pmr2ImporterException() - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2ImporterException

Pmr2ImporterException(String, Throwable) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2ImporterException

Pmr2ImporterException(String) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2ImporterException

Pmr2ImporterException(Throwable) - Constructor for exception de.unirostock.sems.M2CAT.connector.pmr2.Pmr2ImporterException

priority - Variable in class de.unirostock.sems.M2CAT.executor.PriorityJob

PriorityJob - Class in de.unirostock.sems.M2CAT.executor

PriorityJob(int) - Constructor for class de.unirostock.sems.M2CAT.executor.PriorityJob

PriorityThreadPoolExecutor - Class in de.unirostock.sems.M2CAT.executor

PriorityThreadPoolExecutor(int, int, long, TimeUnit) - Constructor for class de.unirostock.sems.M2CAT.executor.PriorityThreadPoolExecutor

PROCESSING - Static variable in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

PublicationInformation - Class in de.unirostock.sems.M2CAT.datamodel.information

PublicationInformation(String, String, String, List<VCard>, Date) - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

PublicationInformation() - Constructor for class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

PubmedConnector - Class in de.unirostock.sems.M2CAT.connector.publication

PubmedConnector() - Constructor for class de.unirostock.sems.M2CAT.connector.publication.PubmedConnector

pubmedUrn - Variable in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

putGit(String, File) - Static method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector

R

register(ArchiveInformation) - Method in class de.unirostock.sems.M2CAT.ArchiveCache

Registers an archive in the cache.

REPOSITORY_TYPE() - Constructor for class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation.REPOSITORY_TYPE

repositoryType - Variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

repositoryUrl - Variable in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

ResultRestApi - Class in de.unirostock.sems.M2CAT.rest

ResultRestApi() - Constructor for class de.unirostock.sems.M2CAT.rest.ResultRestApi

RetrievalConnector - Interface in de.unirostock.sems.M2CAT.connector

RetrievalFactory - Class in de.unirostock.sems.M2CAT

RetrievalJob - Class in de.unirostock.sems.M2CAT.connector

Class representing a job to retrieve additional information corresponding an archive/model

RetrievalJob(ArchiveInformation, RetrievalConnector, int) - Constructor for class de.unirostock.sems.M2CAT.connector.RetrievalJob

RetrievalJob.JobState - Enum in de.unirostock.sems.M2CAT.connector

retrieve() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

Execution routine.

run() - Method in class de.unirostock.sems.M2CAT.connector.RetrievalJob

S

savePage(String) - Static method in class de.unirostock.sems.M2CAT.connector.publication.PubmedConnector

setAbstractText(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

setAdditionFiles(List<AdditionalFileInformation>) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

setAggregationType(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setAnnotationRankerWeight(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setAuthors(List<VCard>) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

setCreated(Date) - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

setCreators(List<VCard>) - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

setDescription(String) - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

setDocumentURI(URI) - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

setFileName(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

setFileSource(URI) - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

setId(String) - Method in class de.unirostock.sems.M2CAT.beans.ModelResult

setId(String) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

setJournal(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

setMetaData(OmexMetaData) - Method in class de.unirostock.sems.M2CAT.datamodel.information.AdditionalFileInformation

setMetaData(MetaData) - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

setModel(Model) - Method in class de.unirostock.sems.M2CAT.beans.ModelResult

setModel(ModelInformation) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

setModelId(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

setModelName(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.ModelInformation

setModelRankerWeight(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setModified(List<Date>) - Method in class de.unirostock.sems.M2CAT.datamodel.meta.OmexMetaData

setPersonRankerWeight(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setProcess(double) - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

setPublicationRankerWeight(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setPublished(Date) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

setPubmedUrn(URI) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

setRepositoryType(String) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

setRepositoryUrl(String) - Method in class de.unirostock.sems.M2CAT.datamodel.ArchiveInformation

setRequest(String) - Method in class de.unirostock.sems.M2CAT.beans.MorreSearch

setStarted(Date) - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

setState(String) - Method in class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

setTitle(String) - Method in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

startRetrieval(String) - Method in class de.unirostock.sems.M2CAT.rest.ResultRestApi

startRetrieving(String) - Method in class de.unirostock.sems.M2CAT.RetrievalFactory

startRetrieving(String, int) - Method in class de.unirostock.sems.M2CAT.RetrievalFactory

startRetriving(ArchiveInformation) - Method in class de.unirostock.sems.M2CAT.connector.bmdb.BmdbConnector

startRetriving(ArchiveInformation) - Method in class de.unirostock.sems.M2CAT.connector.masymos.MasymosConnector

startRetriving(ArchiveInformation) - Method in class de.unirostock.sems.M2CAT.connector.pmr2.Pmr2Connector

startRetriving(ArchiveInformation) - Method in class de.unirostock.sems.M2CAT.connector.publication.PubmedConnector

startRetriving(ArchiveInformation) - Method in interface de.unirostock.sems.M2CAT.connector.RetrievalConnector

state - Variable in class de.unirostock.sems.M2CAT.connector.RetrievalJob

StatusReport - Class in de.unirostock.sems.M2CAT.datamodel.rest

StatusReport(String, Date, double) - Constructor for class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

StatusReport() - Constructor for class de.unirostock.sems.M2CAT.datamodel.rest.StatusReport

T

title - Variable in class de.unirostock.sems.M2CAT.datamodel.information.PublicationInformation

U

Util - Class in de.unirostock.sems.M2CAT

Util() - Constructor for class de.unirostock.sems.M2CAT.Util

V

valueOf(String) - Static method in enum de.unirostock.sems.M2CAT.connector.RetrievalJob.JobState

Returns the enum constant of this type with the specified name.

values() - Static method in enum de.unirostock.sems.M2CAT.connector.RetrievalJob.JobState

Returns an array containing the constants of this enum type, in the order they are declared.

VCard - Class in de.unirostock.sems.M2CAT.datamodel

VCard() - Constructor for class de.unirostock.sems.M2CAT.datamodel.VCard

VCard(Element) - Constructor for class de.unirostock.sems.M2CAT.datamodel.VCard

VCard(String, String, String, String) - Constructor for class de.unirostock.sems.M2CAT.datamodel.VCard

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