- baseUrl - Variable in class de.unirostock.sems.bives.webservice.client.impl.HttpBivesClient
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The base url.
- BivesClientException - Exception in de.unirostock.sems.bives.webservice.client.exception
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The Class BivesClientException.
- BivesClientException() - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesClientException
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Instantiates a new bives client exception.
- BivesClientException(String) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesClientException
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Instantiates a new bives client exception.
- BivesClientException(Throwable) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesClientException
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Instantiates a new bives client exception.
- BivesClientException(String, Throwable) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesClientException
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Instantiates a new bives client exception.
- BivesClientException(String, Throwable, boolean, boolean) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesClientException
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Instantiates a new bives client exception.
- BivesCommands - Interface in de.unirostock.sems.bives.webservice.client
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The Interface BivesCommands providing some static command flags.
- BivesComparisonCommands - Interface in de.unirostock.sems.bives.webservice.client
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The Interface BivesComparisonCommands providing some static command flags for comparison of files.
- BivesComparisonRequest - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesComparisonRequest to compare two versions using BiVeS web service.
- BivesComparisonRequest() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesComparisonRequest
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The Constructor to create a comparison request.
- BivesComparisonRequest(String, String) - Constructor for class de.unirostock.sems.bives.webservice.client.BivesComparisonRequest
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The Constructor to create a comparison request.
- BivesComparisonRequest(String, String, List<String>) - Constructor for class de.unirostock.sems.bives.webservice.client.BivesComparisonRequest
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The Constructor to create a comparison request.
- BivesComparisonResponse - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesComparisonResponse representing a response of a comparison request sent to the BiVeS web service.
- BivesComparisonResponse() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesComparisonResponse
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- BivesException - Exception in de.unirostock.sems.bives.webservice.client.exception
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The Class BivesException.
- BivesException() - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesException
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Instantiates a new bives exception.
- BivesException(String) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesException
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Instantiates a new bives exception.
- BivesException(Throwable) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesException
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Instantiates a new bives exception.
- BivesException(String, Throwable) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesException
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Instantiates a new bives exception.
- BivesException(String, Throwable, boolean, boolean) - Constructor for exception de.unirostock.sems.bives.webservice.client.exception.BivesException
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Instantiates a new bives exception.
- BivesRequest - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesRequest to create a request for the BiVeS web service.
- BivesRequest() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesRequest
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Instantiate a new request.
- BivesResponse - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesResponse representing the response from a BiVeS web service.
- BivesResponse() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesResponse
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The Constructor to create an BiVeS web service response.
- bivesResults - Variable in class de.unirostock.sems.bives.webservice.client.BivesResponse
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The bives results.
- BivesSingleFileCommands - Interface in de.unirostock.sems.bives.webservice.client
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The Interface BivesSingleFileCommands providing some static command flags to get information about certain files.
- BivesSingleFileRequest - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesSingleFileRequest to retrieve some information of a single file from the BiVeS web service.
- BivesSingleFileRequest() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesSingleFileRequest
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The Constructor to create a single-file-request.
- BivesSingleFileRequest(String) - Constructor for class de.unirostock.sems.bives.webservice.client.BivesSingleFileRequest
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The Constructor to create a single-file-request.
- BivesSingleFileRequest(String, List<String>) - Constructor for class de.unirostock.sems.bives.webservice.client.BivesSingleFileRequest
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The Constructor to create a single-file-request.
- BivesSingleFileResponse - Class in de.unirostock.sems.bives.webservice.client
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The Class BivesSingleFileResponse representing a response of a single-file-request sent to the BiVeS web service.
- BivesSingleFileResponse() - Constructor for class de.unirostock.sems.bives.webservice.client.BivesSingleFileResponse
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Instantiates a new bives single file response.
- BivesWs - Interface in de.unirostock.sems.bives.webservice.client
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The Interface to send a request to the BiVeS web service.
- COMMAND_COMPONENT_HIERARCHY_DOT - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the component hierarchy encoded in DOT (only available for CellML files)
- COMMAND_COMPONENT_HIERARCHY_GRAPHML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
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get the component hierarchy encoded in GraphML (only available for CellML files)
- COMMAND_COMPONENT_HIERARCHY_JSON - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
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get the component hierarchy encoded in JSON (only available for CellML files)
- COMMAND_DOCUMENT_TYPE - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
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get the document type of the file
- COMMAND_FORCE_CELLML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesCommands
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force CellML file interpretation
- COMMAND_FORCE_REGULAR - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesCommands
-
force regular file interpretation (don't try to read as SBML or CellML)
- COMMAND_FORCE_SBML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesCommands
-
force SBML file interpretation
- COMMAND_META - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get some meta information about the file
- COMMAND_REACTIONS_DOT - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the reaction network encoded in DOT
- COMMAND_REACTIONS_GRAPHML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the reaction network encoded in GraphML
- COMMAND_REACTIONS_JSON - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the reaction network encoded in JSON
- COMMAND_REPORT_HTML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the human readable report encoded in HTML
- COMMAND_REPORT_MARKDOWN - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the human readable report encoded in MarkDown
- COMMAND_REPORT_RESTRUCTURED_TEXT - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the human readable report encoded in reStructuredText
- COMMAND_SET_LOG_STACKTRACE - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesCommands
-
just intended to help server administrators to fix issues
- COMMAND_SET_VERBOSE - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesCommands
-
just intended to help server administrators to fix problems
- COMMAND_SINGLE_FILE_COMPONENT_HIERARCHY_DOT - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the component hierarchy encoded in DOT (only available for CellML files)
- COMMAND_SINGLE_FILE_COMPONENT_HIERARCHY_GRAPHML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the component hierarchy encoded in GraphML (only available for CellML files)
- COMMAND_SINGLE_FILE_COMPONENT_HIERARCHY_JSON - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the component hierarchy encoded in JSON (only available for CellML files)
- COMMAND_SINGLE_FILE_REACTIONS_DOT - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the reaction network encoded in DOT
- COMMAND_SINGLE_FILE_REACTIONS_GRAPHML - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the reaction network encoded in GraphML
- COMMAND_SINGLE_FILE_REACTIONS_JSON - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the reaction network encoded in JSON
- COMMAND_SINGLE_FLATTEN - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesSingleFileCommands
-
get the flattened model
- COMMAND_XML_DIFF - Static variable in interface de.unirostock.sems.bives.webservice.client.BivesComparisonCommands
-
get the diff encoded in xml
- commands - Variable in class de.unirostock.sems.bives.webservice.client.BivesRequest
-
The commands.