Uses of Class
de.unirostock.sems.bives.ds.rn.ReactionNetworkSubstance

Packages that use ReactionNetworkSubstance

Package	Description
de.unirostock.sems.bives.ds.rn

Uses of ReactionNetworkSubstance in de.unirostock.sems.bives.ds.rn

Fields in de.unirostock.sems.bives.ds.rn declared as ReactionNetworkSubstance

Modifier and Type	Field and Description
ReactionNetworkSubstance	ReactionNetworkSubstanceRef.subst The substance.

Methods in de.unirostock.sems.bives.ds.rn that return ReactionNetworkSubstance

Modifier and Type	Method and Description
ReactionNetworkSubstance	ReactionNetworkSubstanceRef.getSubstance() Gets the referenced substance.
ReactionNetworkSubstance	ReactionNetwork.getSubstance(de.unirostock.sems.xmlutils.ds.TreeNode node) Gets a substance.

Methods in de.unirostock.sems.bives.ds.rn that return types with arguments of type ReactionNetworkSubstance

Modifier and Type	Method and Description
Collection<ReactionNetworkSubstance>	ReactionNetwork.getSubstances() Gets the substances.

Methods in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkSubstance

Modifier and Type	Method and Description
void	ReactionNetworkReaction.addInputA(ReactionNetworkSubstance subst, SBOTerm sbo) Add a reactant of this reaction in its original version.
void	ReactionNetworkReaction.addInputB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a reactant of this reaction in its modified version.
void	ReactionNetworkReaction.addModA(ReactionNetworkSubstance subst, SBOTerm sbo) Adds the modifier of this reaction in its original version.
void	ReactionNetworkReaction.addModB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a modifier of this reaction in its modified version.
void	ReactionNetworkReaction.addOutputA(ReactionNetworkSubstance subst, SBOTerm sbo) Add a product of this reaction in its original version.
void	ReactionNetworkReaction.addOutputB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a product of this reaction in its modified version.
void	ReactionNetwork.setSubstance(de.unirostock.sems.xmlutils.ds.TreeNode node, ReactionNetworkSubstance subst) Adds a substance.

Constructors in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkSubstance

Constructor and Description
ReactionNetworkSubstanceRef(ReactionNetworkSubstance subst, boolean flagA, boolean flagB, SBOTerm modTermA, SBOTerm modTermB) Instantiates a new substance reference.