Uses of Class
de.unirostock.sems.bives.ds.rn.ReactionNetworkCompartment

Packages that use ReactionNetworkCompartment

Package	Description
de.unirostock.sems.bives.ds.rn

Uses of ReactionNetworkCompartment in de.unirostock.sems.bives.ds.rn

Methods in de.unirostock.sems.bives.ds.rn that return ReactionNetworkCompartment

Modifier and Type	Method and Description
ReactionNetworkCompartment	ReactionNetworkSubstance.getCompartment() Gets the compartment.
ReactionNetworkCompartment	ReactionNetworkReaction.getCompartment() Gets the compartment.
ReactionNetworkCompartment	ReactionNetwork.getCompartment(de.unirostock.sems.xmlutils.ds.TreeNode node) Gets a compartment.

Methods in de.unirostock.sems.bives.ds.rn that return types with arguments of type ReactionNetworkCompartment

Modifier and Type	Method and Description
Collection<ReactionNetworkCompartment>	ReactionNetwork.getCompartments() Gets the compartments.

Methods in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkCompartment

Modifier and Type	Method and Description
void	ReactionNetwork.setCompartment(de.unirostock.sems.xmlutils.ds.TreeNode node, ReactionNetworkCompartment compartment) Adds a compartment.
void	ReactionNetworkSubstance.setCompartmentA(ReactionNetworkCompartment compartment) Sets the compartment in original version.
void	ReactionNetworkReaction.setCompartmentA(ReactionNetworkCompartment compartment) Sets the compartment in original version.
void	ReactionNetworkSubstance.setCompartmentB(ReactionNetworkCompartment compartment) Sets the compartment in modified version.
void	ReactionNetworkReaction.setCompartmentB(ReactionNetworkCompartment compartment) Sets the compartment in modified version.

Constructors in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkCompartment

Constructor and Description
ReactionNetworkReaction(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB, boolean reversible) Instantiates a new ReactionNetwork reaction.
ReactionNetworkSubstance(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB) Instantiates a new substance in a reaction network.