Uses of Class
de.unirostock.sems.bives.ds.ontology.SBOTerm

Packages that use SBOTerm

Package	Description
de.unirostock.sems.bives.ds.ontology
de.unirostock.sems.bives.ds.rn

Uses of SBOTerm in de.unirostock.sems.bives.ds.ontology

Methods in de.unirostock.sems.bives.ds.ontology that return SBOTerm

Modifier and Type	Method and Description
static SBOTerm	SBOTerm.createInhibitor() Creates a dummy inhibitor.
static SBOTerm	SBOTerm.createStimulator() Creates a dummy stimulator.

Methods in de.unirostock.sems.bives.ds.ontology with parameters of type SBOTerm

Modifier and Type	Method and Description
static boolean	SBOTerm.sameModifier(SBOTerm modTermA, SBOTerm modTermB) Check if modifiers are equal (in terms of chemical reaction networks).

Uses of SBOTerm in de.unirostock.sems.bives.ds.rn

Fields in de.unirostock.sems.bives.ds.rn declared as SBOTerm

Modifier and Type	Field and Description
SBOTerm	ReactionNetworkSubstanceRef.modTermA The optional modification terms in original doc.
SBOTerm	ReactionNetworkSubstanceRef.modTermB The optional modification terms in modified doc.

Methods in de.unirostock.sems.bives.ds.rn with parameters of type SBOTerm

Modifier and Type	Method and Description
void	ReactionNetworkReaction.addInputA(ReactionNetworkSubstance subst, SBOTerm sbo) Add a reactant of this reaction in its original version.
void	ReactionNetworkReaction.addInputB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a reactant of this reaction in its modified version.
void	ReactionNetworkReaction.addModA(ReactionNetworkSubstance subst, SBOTerm sbo) Adds the modifier of this reaction in its original version.
void	ReactionNetworkReaction.addModB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a modifier of this reaction in its modified version.
void	ReactionNetworkReaction.addOutputA(ReactionNetworkSubstance subst, SBOTerm sbo) Add a product of this reaction in its original version.
void	ReactionNetworkReaction.addOutputB(ReactionNetworkSubstance subst, SBOTerm sbo) Add a product of this reaction in its modified version.
void	ReactionNetworkSubstanceRef.setSboA(SBOTerm modTermA) Sets the SBOTerm as defined in the original version.
void	ReactionNetworkSubstanceRef.setSboB(SBOTerm modTermB) Sets the SBOTerm as defined in the modified version.

Constructors in de.unirostock.sems.bives.ds.rn with parameters of type SBOTerm

Constructor and Description
ReactionNetworkSubstanceRef(ReactionNetworkSubstance subst, boolean flagA, boolean flagB, SBOTerm modTermA, SBOTerm modTermB) Instantiates a new substance reference.