Uses of Class
de.unirostock.sems.bives.cellml.parser.CellMLEntity

Packages that use CellMLEntity

Package	Description
de.unirostock.sems.bives.cellml.parser

Uses of CellMLEntity in de.unirostock.sems.bives.cellml.parser

Subclasses of CellMLEntity in de.unirostock.sems.bives.cellml.parser

Modifier and Type	Class	Description
class	CellMLComponent	The Class CellMLComponent representing a single component in a CellML model.
class	CellMLModel	The Class CellMLModel representing a computational model that was encoded in CellML.
class	CellMLReaction	The Class CellMLReaction representing a reaction defined in a CellML model.
class	CellMLReactionSubstance	The Class CellMLReactionSubstance representing a substance taking part in a reaction.
class	CellMLReactionSubstance.Role	The Class Role.
class	CellMLUnit	The Class CellMLUnit representing a unit in a CellML model.
class	CellMLUserUnit	The Class CellMLUserUnit representing a CellML unit defined by a user.
class	CellMLVariable	The Class CellMLVariable representing a variable of a CellML model.

Methods in de.unirostock.sems.bives.cellml.parser that return CellMLEntity

Modifier and Type	Method	Description
CellMLEntity	CellMLModel.getEntityByMetaId(String metaId)	Get an entity by its meta id.
CellMLEntity	CellMLModel.getFromNode(de.unirostock.sems.xmlutils.ds.TreeNode node)	Gets an entity given a node in an XML tree.

Methods in de.unirostock.sems.bives.cellml.parser with parameters of type CellMLEntity

Modifier and Type	Method	Description
List<de.unirostock.sems.bives.ds.rdf.RDFDescription>	CellMLModel.getDescriptions(CellMLEntity entity)	Gets the RDF descriptions for an entity.
void	CellMLModel.mapNode(de.unirostock.sems.xmlutils.ds.DocumentNode node, CellMLEntity entity)	Map document node to a CellML entity.
void	CellMLModel.registerMetaId(String metaId, CellMLEntity cellMLEntity)	Register an entity by its meta id.

Method parameters in de.unirostock.sems.bives.cellml.parser with type arguments of type CellMLEntity

Modifier and Type	Method	Description
void	CellMLComponent.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)	Adds the units the variables in this component depend on to a global list of dependencies.
void	CellMLUserUnit.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)	Add the units this unit depends on to a global list of dependencies.
void	CellMLVariable.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)	Adds the unit this variable depends on to a global list of dependencies.