Uses of Class
de.unirostock.sems.bives.cellml.exception.BivesCellMLParseException

Packages that use BivesCellMLParseException

Package	Description
de.unirostock.sems.bives.cellml.api
de.unirostock.sems.bives.cellml.parser

Uses of BivesCellMLParseException in de.unirostock.sems.bives.cellml.api

Constructors in de.unirostock.sems.bives.cellml.api that throw BivesCellMLParseException

Constructor	Description
CellMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a, de.unirostock.sems.xmlutils.ds.TreeDocument b)	Instantiates a new CellML differ.
CellMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a, de.unirostock.sems.xmlutils.ds.TreeDocument b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new CellML differ.
CellMLDiff(File a, File b)	Instantiates a new CellML differ.
CellMLDiff(File a, File b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new CellML differ.
CellMLDiff(String a, String b)	Instantiates a new CellML differ.
CellMLDiff(String a, String b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)	Instantiates a new CellML differ.
CellMLSingle(de.unirostock.sems.xmlutils.ds.TreeDocument td)	Instantiates a new object.
CellMLSingle(File file)	Instantiates a new object.
CellMLSingle(String xml)	Instantiates a new object.

Uses of BivesCellMLParseException in de.unirostock.sems.bives.cellml.parser

Methods in de.unirostock.sems.bives.cellml.parser that throw BivesCellMLParseException

Modifier and Type	Method	Description
static CellMLConnection.ConnectedComponents	CellMLConnection.parseConnection(CellMLModel model, CellMLHierarchy hierarchy, de.unirostock.sems.xmlutils.ds.DocumentNode connection, HashMap<String,CellMLComponent> limit)	Parses a connection as defined in a CellML document.
void	CellMLHierarchy.parseGroup(de.unirostock.sems.xmlutils.ds.DocumentNode node)	Parses a component group.
static String	CellMLReactionSubstance.resolveDirection(int direction)	Resolve direction of this substance.
static int	CellMLReactionSubstance.resolveDirection(String direction)	Resolve direction.
static String	CellMLReactionSubstance.resolveRole(int role)	Resolve the role flag to get a textual representation.
static int	CellMLReactionSubstance.resolveRole(String role)	Resolve role as a string to get the corresponding flag.
static int	CellMLUserUnit.scale(String s)	Get the scaling factor given a textual representation.

Constructors in de.unirostock.sems.bives.cellml.parser that throw BivesCellMLParseException

Constructor	Description
BaseQuantity(de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new base quantity.
CellMLComponent(CellMLModel model, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new CellML component.
CellMLDocument(de.unirostock.sems.xmlutils.ds.TreeDocument doc)	Instantiates a new cell ml document.
CellMLImporter(de.unirostock.sems.xmlutils.ds.DocumentNode node, CellMLModel model)	Instantiates a new CellML importer.
CellMLModel(CellMLDocument doc, de.unirostock.sems.xmlutils.ds.DocumentNode rootNode)	Instantiates a new model.
CellMLReaction(CellMLModel model, CellMLComponent component, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new CellML reaction.
CellMLReactionSubstance(CellMLModel model, CellMLComponent component, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new CellML reaction substance.
CellMLUserUnit(CellMLModel model, CellMLUnitDictionary dict, CellMLComponent component, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new CellML user unit.
CellMLVariable(CellMLModel model, CellMLComponent component, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new CellML variable.
Role(CellMLModel model, de.unirostock.sems.xmlutils.ds.DocumentNode node)	Instantiates a new role.