Package de.unirostock.sems.bives.cellml.algorithm

Class CellMLGraphProducer

java.lang.Object

de.unirostock.sems.bives.algorithm.GraphProducer

de.unirostock.sems.bives.cellml.algorithm.CellMLGraphProducer

public class CellMLGraphProducer
extends de.unirostock.sems.bives.algorithm.GraphProducer

The Class CellMLGraphProducer to create the graphs.

Author:

Martin Scharm

Field Summary

Fields inherited from class de.unirostock.sems.bives.algorithm.GraphProducer

hn, rn, single

Constructor Summary

Constructors

Constructor	Description
CellMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, CellMLDocument cellmlDocA, CellMLDocument cellmlDocB)	Instantiates a new CellML graph producer for difference graphs.
CellMLGraphProducer(CellMLDocument cellmlDoc)	Instantiates a new CellML graph producer for single document graphs.

Method Summary

Modifier and Type	Method	Description
protected void	processHnA()	Process Hierarchy Network of the original document.
protected void	processHnB()	Process Hierarchy Network of the modified document.
protected void	processRnA()	Process Reaction Network of the original document.
protected void	processRnB()	Process Reaction Network of the modified document.
protected void	produceHierarchyGraph()
protected void	produceReactionNetwork()

Methods inherited from class de.unirostock.sems.bives.algorithm.GraphProducer

getCRN, getHierarchy, getReactionNetwork

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CellMLGraphProducer

public CellMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                           CellMLDocument cellmlDocA,
                           CellMLDocument cellmlDocB)

Instantiates a new CellML graph producer for difference graphs.

Parameters:

conMgmt - the connection manager

cellmlDocA - the original document

cellmlDocB - the modified document

CellMLGraphProducer

public CellMLGraphProducer(CellMLDocument cellmlDoc)

Instantiates a new CellML graph producer for single document graphs.

Parameters:

cellmlDoc - the CellML document

Method Detail

produceReactionNetwork

protected void produceReactionNetwork()

Specified by:

produceReactionNetwork in class de.unirostock.sems.bives.algorithm.GraphProducer

produceHierarchyGraph

protected void produceHierarchyGraph()

Specified by:

produceHierarchyGraph in class de.unirostock.sems.bives.algorithm.GraphProducer

processHnA

protected void processHnA()

Process Hierarchy Network of the original document.

processHnB

protected void processHnB()

Process Hierarchy Network of the modified document.

processRnA

protected void processRnA()
                   throws de.unirostock.sems.bives.exception.BivesUnsupportedException

Process Reaction Network of the original document.

Throws:

de.unirostock.sems.bives.exception.BivesUnsupportedException

processRnB

protected void processRnB()
                   throws de.unirostock.sems.bives.exception.BivesUnsupportedException

Process Reaction Network of the modified document.

Throws:

de.unirostock.sems.bives.exception.BivesUnsupportedException